Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement
Identifieur interne : 000111 ( Main/Exploration ); précédent : 000110; suivant : 000112Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement
Auteurs : Abirami Ramalingam [Inde] ; Himabindu Kudapa [Inde] ; Lekha T. Pazhamala [Inde] ; Wolfram Weckwerth [Autriche] ; Rajeev K. Varshney [Inde, Australie]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
The crop legumes such as chickpea, common bean, cowpea, peanut, pigeonpea, soybean, etc. are important sources of nutrition and contribute to a significant amount of biological nitrogen fixation (>20 million tons of fixed nitrogen) in agriculture. However, the production of legumes is constrained due to abiotic and biotic stresses. It is therefore imperative to understand the molecular mechanisms of plant response to different stresses and identify key candidate genes regulating tolerance which can be deployed in breeding programs. The information obtained from transcriptomics has facilitated the identification of candidate genes for the given trait of interest and utilizing them in crop breeding programs to improve stress tolerance. However, the mechanisms of stress tolerance are complex due to the influence of multi-genes and post-transcriptional regulations. Furthermore, stress conditions greatly affect gene expression which in turn causes modifications in the composition of plant proteomes and metabolomes. Therefore, functional genomics involving various proteomics and metabolomics approaches have been obligatory for understanding plant stress tolerance. These approaches have also been found useful to unravel different pathways related to plant and seed development as well as symbiosis. Proteome and metabolome profiling using high-throughput based systems have been extensively applied in the model legume species,
Url:
DOI: 10.3389/fpls.2015.01116
PubMed: 26734026
PubMed Central: 4689856
Affiliations:
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Pazhamala</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)</institution><country>Hyderabad, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Weckwerth, Wolfram" sort="Weckwerth, Wolfram" uniqKey="Weckwerth W" first="Wolfram" last="Weckwerth">Wolfram Weckwerth</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Ecogenomics and Systems Biology, University of Vienna</institution><country>Vienna, Austria</country></nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Varshney, Rajeev K" sort="Varshney, Rajeev K" uniqKey="Varshney R" first="Rajeev K." last="Varshney">Rajeev K. Varshney</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)</institution><country>Hyderabad, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>School of Plant Biology and Institute of Agriculture, The University of Western Australia</institution><country>Crawley, WA, Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26734026</idno><idno type="pmc">4689856</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4689856</idno><idno type="RBID">PMC:4689856</idno><idno type="doi">10.3389/fpls.2015.01116</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000022</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000022</idno><idno type="wicri:Area/Pmc/Curation">000022</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000022</idno><idno type="wicri:Area/Pmc/Checkpoint">000044</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000044</idno><idno type="wicri:Area/Ncbi/Merge">000628</idno><idno type="wicri:Area/Ncbi/Curation">000628</idno><idno type="wicri:Area/Ncbi/Checkpoint">000628</idno><idno type="wicri:Area/Main/Merge">000111</idno><idno type="wicri:Area/Main/Curation">000111</idno><idno type="wicri:Area/Main/Exploration">000111</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement</title><author><name sortKey="Ramalingam, Abirami" sort="Ramalingam, Abirami" uniqKey="Ramalingam A" first="Abirami" last="Ramalingam">Abirami Ramalingam</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)</institution><country>Hyderabad, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Kudapa, Himabindu" sort="Kudapa, Himabindu" uniqKey="Kudapa H" first="Himabindu" last="Kudapa">Himabindu Kudapa</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)</institution><country>Hyderabad, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Pazhamala, Lekha T" sort="Pazhamala, Lekha T" uniqKey="Pazhamala L" first="Lekha T." last="Pazhamala">Lekha T. Pazhamala</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)</institution><country>Hyderabad, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Weckwerth, Wolfram" sort="Weckwerth, Wolfram" uniqKey="Weckwerth W" first="Wolfram" last="Weckwerth">Wolfram Weckwerth</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Department of Ecogenomics and Systems Biology, University of Vienna</institution><country>Vienna, Austria</country></nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Varshney, Rajeev K" sort="Varshney, Rajeev K" uniqKey="Varshney R" first="Rajeev K." last="Varshney">Rajeev K. Varshney</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)</institution><country>Hyderabad, India</country></nlm:aff><country xml:lang="fr">Inde</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>School of Plant Biology and Institute of Agriculture, The University of Western Australia</institution><country>Crawley, WA, Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The crop legumes such as chickpea, common bean, cowpea, peanut, pigeonpea, soybean, etc. are important sources of nutrition and contribute to a significant amount of biological nitrogen fixation (>20 million tons of fixed nitrogen) in agriculture. However, the production of legumes is constrained due to abiotic and biotic stresses. It is therefore imperative to understand the molecular mechanisms of plant response to different stresses and identify key candidate genes regulating tolerance which can be deployed in breeding programs. The information obtained from transcriptomics has facilitated the identification of candidate genes for the given trait of interest and utilizing them in crop breeding programs to improve stress tolerance. However, the mechanisms of stress tolerance are complex due to the influence of multi-genes and post-transcriptional regulations. Furthermore, stress conditions greatly affect gene expression which in turn causes modifications in the composition of plant proteomes and metabolomes. Therefore, functional genomics involving various proteomics and metabolomics approaches have been obligatory for understanding plant stress tolerance. These approaches have also been found useful to unravel different pathways related to plant and seed development as well as symbiosis. Proteome and metabolome profiling using high-throughput based systems have been extensively applied in the model legume species, <italic>Medicago truncatula</italic> and <italic>Lotus japonicus</italic>, as well as in the model crop legume, soybean, to examine stress signaling pathways, cellular and developmental processes and nodule symbiosis. Moreover, the availability of protein reference maps as well as proteomics and metabolomics databases greatly support research and understanding of various biological processes in legumes. Protein-protein interaction techniques, particularly the yeast two-hybrid system have been advantageous for studying symbiosis and stress signaling in legumes. In this review, several studies on proteomics and metabolomics in model and crop legumes have been discussed. Additionally, applications of advanced proteomics and metabolomics approaches have also been included in this review for future applications in legume research. The integration of these “omics” approaches will greatly support the identification of accurate biomarkers in legume smart breeding programs.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Abdallah, C" uniqKey="Abdallah C">C. Abdallah</name></author><author><name sortKey="Dumas Gaudot, E" uniqKey="Dumas Gaudot E">E. Dumas-Gaudot</name></author><author><name sortKey="Renaut, J" uniqKey="Renaut J">J. Renaut</name></author><author><name sortKey="Sergeant, K" uniqKey="Sergeant K">K. Sergeant</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Abdallah, C" uniqKey="Abdallah C">C. Abdallah</name></author><author><name sortKey="Valot, B" uniqKey="Valot B">B. Valot</name></author><author><name sortKey="Guillier, C" uniqKey="Guillier C">C. 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Hong</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Australie</li><li>Autriche</li><li>Inde</li></country></list><tree><country name="Inde"><noRegion><name sortKey="Ramalingam, Abirami" sort="Ramalingam, Abirami" uniqKey="Ramalingam A" first="Abirami" last="Ramalingam">Abirami Ramalingam</name></noRegion><name sortKey="Kudapa, Himabindu" sort="Kudapa, Himabindu" uniqKey="Kudapa H" first="Himabindu" last="Kudapa">Himabindu Kudapa</name><name sortKey="Pazhamala, Lekha T" sort="Pazhamala, Lekha T" uniqKey="Pazhamala L" first="Lekha T." last="Pazhamala">Lekha T. Pazhamala</name><name sortKey="Varshney, Rajeev K" sort="Varshney, Rajeev K" uniqKey="Varshney R" first="Rajeev K." last="Varshney">Rajeev K. Varshney</name></country><country name="Autriche"><noRegion><name sortKey="Weckwerth, Wolfram" sort="Weckwerth, Wolfram" uniqKey="Weckwerth W" first="Wolfram" last="Weckwerth">Wolfram Weckwerth</name></noRegion></country><country name="Australie"><noRegion><name sortKey="Varshney, Rajeev K" sort="Varshney, Rajeev K" uniqKey="Varshney R" first="Rajeev K." last="Varshney">Rajeev K. Varshney</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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